marker_set Derived Type

type, public, extends(lagrangian_set) :: marker_set

A collection of IB markers


Inherits

type~~marker_set~~InheritsGraph type~marker_set marker_set type~lagrangian_set lagrangian_set type~marker_set->type~lagrangian_set type~monitor_set monitor_set type~marker_set->type~monitor_set monitors type~op_obj op_obj type~marker_set->type~op_obj op type~parser_obj parser_obj type~marker_set->type~parser_obj parser type~timer_obj timer_obj type~marker_set->type~timer_obj timer MPI_Datatype MPI_Datatype type~lagrangian_set->MPI_Datatype MPI_TYPE type~block_obj block_obj type~lagrangian_set->type~block_obj cblock, block type~lagrangian_obj lagrangian_obj type~lagrangian_set->type~lagrangian_obj p, sample type~parallel_obj parallel_obj type~lagrangian_set->type~parallel_obj parallel type~sllist_obj sllist_obj type~lagrangian_set->type~sllist_obj neighbors type~hashtbl_obj hashtbl_obj type~monitor_set->type~hashtbl_obj tbl type~monitor_obj monitor_obj type~monitor_set->type~monitor_obj m type~monitor_set->type~parallel_obj parallel type~op_obj->type~block_obj block type~eulerian_obj_i eulerian_obj_i type~op_obj->type~eulerian_obj_i mask type~op_obj->type~parallel_obj parallel type~entry_obj entry_obj type~parser_obj->type~entry_obj entries type~timer_obj->type~parser_obj parser type~block_obj->MPI_Datatype gc_slab_r, gc_slab_i type~block_obj->type~parallel_obj parallel type~axis_obj axis_obj type~block_obj->type~axis_obj axis, axis_partition type~eulerian_obj_base eulerian_obj_base type~eulerian_obj_i->type~eulerian_obj_base type~hashtbl_obj->type~sllist_obj vec type~column_obj column_obj type~monitor_obj->type~column_obj col type~parallel_obj->MPI_Datatype REAL_SP, REAL_DP, REAL_WP, COMPLEX_SP, COMPLEX_DP, COMPLEX_WP, INTEGER, INT8, LOGICAL MPI_Info MPI_Info type~parallel_obj->MPI_Info mpi_info type~communicators communicators type~parallel_obj->type~communicators comm type~patch patch type~parallel_obj->type~patch rank type~sllist_obj->type~sllist_obj child MPI_Comm MPI_Comm type~communicators->MPI_Comm w, g type~eulerian_obj_base->type~block_obj block type~eulerian_obj_base->type~parallel_obj parallel

Inherited by

type~~marker_set~~InheritedByGraph type~marker_set marker_set type~cdifs_obj cdifs_obj type~cdifs_obj->type~marker_set IB type~respart_set ResPart_set type~cdifs_obj->type~respart_set RP type~grans_obj grans_obj type~grans_obj->type~marker_set IB type~grans_obj->type~respart_set RP type~respart_set->type~marker_set ib type~solid_obj solid_obj type~solid_obj->type~marker_set type~solid_set solid_set type~solid_set->type~solid_obj p

Components

Type Visibility Attributes Name Initial
integer, public :: MPI_SIZE = 44

MPI size
type(MPI_Datatype), public :: MPI_TYPE

MPI variable type
type(block_obj), public, pointer :: block => null()

Associated block structure
type(block_obj), public :: cblock

Collision block
integer, public :: count = 0

Total count across all MPI ranks
integer, public :: count_ = 0

Local count for this rank
integer, public, allocatable :: count_proc(:)

of lagrangian objects per proc
procedure(kernel_1D), public, nopass, pointer :: g1ex => int_g1_triangle

1D kernel used in extrapolations
procedure(kernel_1D), public, nopass, pointer :: g1in => g1_triangle

1D kernel used in interpolations
real(kind=wp), public :: l_filter

Half filter width
type(monitor_set), public, pointer :: monitors => null()

Monitors to print to stdout and files
character(len=:), public, allocatable :: name

Name of the Lagrangian set
type(sllist_obj), public, allocatable :: neighbors(:,:,:)

Singly linked list of neighbors
integer, public, allocatable :: objincell(:,:,:)

Number of objects in this list
type(op_obj), public, pointer :: op => null()

operators object
logical, public :: overwrite = .true.

Switch to overwrite IO files
class(lagrangian_obj), public, allocatable :: p(:)

Array of Lagrangian_obj or any extended type
type(parallel_obj), public, pointer :: parallel => null()

Associated parallel structure
type(parser_obj), public, pointer :: parser => null()

Parser for input file
character(len=str64), public :: read_file

file to read
class(lagrangian_obj), public, allocatable :: sample

Sample used in allocation of polymorphic data
integer, public :: stib = 3

Stencil size for filtering
type(timer_obj), public, pointer :: timer => null()

Timer utility
character(len=str64), public :: write_file

file to write

Type-Bound Procedures

procedure, public :: ApplyPeriodicity => lagrangian_set_ApplyPeriodicity

procedure, public :: CoM => marker_set_CoM

  • private function marker_set_CoM(this) result(CoM)

    Find the center of mass

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Set of ib markers

    Return Value real(kind=wp), (3)

    Position of center of mass

procedure, public :: Communicate => lagrangian_set_Communicate

  • private subroutine lagrangian_set_Communicate(this, GetOwnerRankOpt)

    Communicate lagrangian objects across MPI_rank

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Set of Lagrangian objects
    procedure(locator), optional :: GetOwnerRankOpt

    MPI Rank locator for communications

procedure, public :: ComputeSolidVolFrac => marker_set_ComputeSolidVolFrac

  • private subroutine marker_set_ComputeSolidVolFrac(this, VF, solver, MaxTol, MaxIt, RelaxType, Rel, It, intRHS)

    Compute the solid volume fraction on the mesh

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Set of ib markers
    type(eulerian_obj_r), intent(inout) :: VF

    Volume fraction
    character(len=*), intent(in) :: solver

    Name of solver to be used
    real(kind=wp), intent(in) :: MaxTol

    Maximum relative tolerance
    integer, intent(in) :: MaxIt

    Maximum number of subiterations
    integer, intent(in), optional :: RelaxType

    Relaxation type
    real(kind=wp), intent(out), optional :: Rel

    Relative error at end of solve
    integer, intent(out), optional :: It

    Number of iterations performed
    real(kind=wp), intent(out), optional :: intRHS

    Magnitude of RHS

procedure, public :: CreateMPIType => lagrangian_set_CreateMPIType

procedure, public :: Filter => marker_set_Filter

  • private subroutine marker_set_Filter(this, var, field)

    Compute a filtered quantity on the eulerian grid

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Set of ib markers
    character(len=*), intent(in) :: var

    Variable to compute
    type(eulerian_obj_r), intent(inout) :: field

    Filtered quantity

generic, public :: Finalize => lagrangian_set_Final

  • private subroutine ResPart_set_Final(this)

    Finalize the ResPart_set type. This subourtine replaces the inheritted lagrangian_final.

    Arguments

    Type IntentOptional Attributes Name
    class(ResPart_set), intent(inout) :: this

    Set of resolved partilces

procedure, public :: FreeNeighborList => lagrangian_set_FreeNeighborList

procedure, public :: GetIBForcing => marker_set_GetIBForcing

  • private subroutine marker_set_GetIBForcing(this, Um, Vm, Wm, rhof, SA, ibF, dt)

    Compute the IB forcing

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Collection of Resolved Particles
    type(eulerian_obj_r), intent(in) :: Um

    Velocity in 1-dir
    type(eulerian_obj_r), intent(in) :: Vm

    Velocity in 2-dir
    type(eulerian_obj_r), intent(in) :: Wm

    Velocity in 3-dir
    real(kind=wp), intent(in) :: rhof

    Fluid density
    type(eulerian_obj_r), intent(in) :: SA

    Surface area
    type(eulerian_obj_r), intent(inout) :: ibF(3)

    IB forcing
    real(kind=wp), intent(in) :: dt

    Timestep

procedure, public :: GetOwnerRankByBlock => lagrangian_set_GetOwnerRankByBlock

  • private function lagrangian_set_GetOwnerRankByBlock(this, lagobj) result(rank)

    Returns the MPI rank that should own this lagrangian object based on which block it belongs to

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A set of Lagrangian objects
    class(lagrangian_obj), intent(in) :: lagobj

    Lagrangian obj to locate

    Return Value integer

    rank that should own lagobj

procedure, public :: GetReadFileName => lagrangian_set_GetReadFileName

  • private function lagrangian_set_GetReadFileName(this) result(name)

    Return the base name of file to write

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A collection of Eulerian objects

    Return Value character(len=str64)

    Name of file

procedure, public :: GetWriteFileName => lagrangian_set_GetWriteFileName

  • private function lagrangian_set_GetWriteFileName(this) result(name)

    Return the base name of file to write

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A collection of Eulerian objects

    Return Value character(len=str64)

    Name of file

procedure, public :: Info => lagrangian_set_Info

  • private subroutine lagrangian_set_Info(this)

    Prints diagnostics information about the derived type

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Lagrangian array to dump

generic, public :: Initialize => lagrangian_set_Init

  • private subroutine ResPart_set_Init(this, name, block, parallel)

    Initialize the ResPart_set type. This subourtine replaces the inheritted lagrangian_init.

    Arguments

    Type IntentOptional Attributes Name
    class(ResPart_set), intent(inout) :: this

    Set of resolved partilces
    character(len=*), intent(in) :: name

    Name of instance
    type(block_obj), intent(in), target :: block

    A block object
    type(parallel_obj), intent(in), target :: parallel

    parallel structure from main program

procedure, public :: LoadSTL => marker_set_LoadSTL

  • private subroutine marker_set_LoadSTL(this, STL_file)

    Load markers from a binary STL. This is a serial routine.

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Set of ib markers
    character(len=*), intent(in) :: STL_file

    Variable to compute

procedure, public :: Localize => lagrangian_set_Localize

  • private subroutine lagrangian_set_Localize(this)

    Localize a Lagrangian object on the grid Returns the location of the closest collocated cell (staggering=0

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Lagrangian array to dump

procedure, public :: Prepare => marker_set_Prepare

  • private subroutine marker_set_Prepare(this, timer, parser, operators, monitors)

    Prepare marker_set for use with solvers

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Immersed boundary
    type(timer_obj), intent(in), target :: timer

    Timer utility
    type(parser_obj), intent(in), target :: parser

    Parser for input file
    type(op_obj), intent(in), target :: operators

    Operators object
    type(monitor_set), intent(in), target :: monitors

    Monitors to print to stdout and files

procedure, public :: Read => marker_set_Read

  • private subroutine marker_set_Read(this, iter, time)

    Read marker data from file in parallel

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Set of ib markers
    integer, intent(out) :: iter

    Iteration at write
    real(kind=wp), intent(out) :: time

    Time at write

procedure, public :: Recycle => lagrangian_set_Recycle

  • private subroutine lagrangian_set_Recycle(this)

    Sorting routine: stacks active lagrangian objects at the beginning of the array then resizes

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Lagrangian array to dump

procedure, public :: Resize => lagrangian_set_Resize

  • private subroutine lagrangian_set_Resize(this, n)

    Changes the size of an array of Lagrangian objects

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Lagrangian array to dump
    integer, intent(in) :: n

    New size

procedure, public :: SetFilterKernel => lagrangian_set_SetFilterKernel

  • private subroutine lagrangian_set_SetFilterKernel(this, kernel_interp, kernel_extrap)

    Reset the filter kerrnel Default is Triangle for interpolation and extrapolation

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Set of Lagrangian objects
    integer, intent(in) :: kernel_interp

    Filter kernel for interpolations
    integer, intent(in) :: kernel_extrap

    Filter kernel for extrapolations

procedure, public :: SetFilterSize => lagrangian_set_SetFilterSize

  • private subroutine lagrangian_set_SetFilterSize(this, l_filter)

    Adjust the size of the filter

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Set of Lagrangian objects
    real(kind=wp), intent(in) :: l_filter

    Filter size

procedure, public :: SetMPIDataTypeParams => marker_set_SetMPIDataTypeParams

  • private subroutine marker_set_SetMPIDataTypeParams(this, types, lengths, displacement)

    Set up parameters used when creating the MPI derived type Create the MPI structure

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Set of ib markers
    type(MPI_Datatype), intent(out), allocatable :: types(:)

    Array of types
    integer, intent(out), allocatable :: lengths(:)

    Array of lengths
    integer(kind=MPI_ADDRESS_KIND), intent(out), allocatable :: displacement(:)

    Array of displacements

procedure, public :: SetObjectType => marker_set_SetObjectType

  • private subroutine marker_set_SetObjectType(this)

    Set the sample type used in allocation of polymorphic variables

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Set of ib markers

procedure, public :: SetOverwrite => lagrangian_set_SetOverwrite

  • private subroutine lagrangian_set_SetOverwrite(this, overwrite)

    Set file overwritting

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A collection of Eulerian objects
    logical, intent(in) :: overwrite

    Name of file

procedure, public :: SetReadFileName => lagrangian_set_SetReadFileName

  • private subroutine lagrangian_set_SetReadFileName(this, name)

    Set the base name of file to read

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A collection of Eulerian objects
    character(len=*), intent(in) :: name

    Name of file

procedure, public :: SetWriteFileName => lagrangian_set_SetWriteFileName

  • private subroutine lagrangian_set_SetWriteFileName(this, name)

    Set the base name of file to write

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A collection of Eulerian objects
    character(len=*), intent(in) :: name

    Name of file

procedure, public :: SetupCollisionBlock => lagrangian_set_SetupCollisionBlock

  • private subroutine lagrangian_set_SetupCollisionBlock(this, ds, ngc)

    Initializes cblock to handle collisions. This is extra block is expected to be coarser than the simulation block. It is used for cheap neighbor searches.

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A set of Lagrangian objects
    real(kind=wp), intent(in) :: ds

    Target grid spacing
    integer, intent(in) :: ngc

    Number of ghost cells for collision block

procedure, public :: UpdateCount => lagrangian_set_UpdateCount

  • private subroutine lagrangian_set_UpdateCount(this)

    Updates the total count of Lagrangian objects

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Lagrangian array to dump

procedure, public :: UpdateGhostObjects => lagrangian_set_UpdateGhostObjects

  • private subroutine lagrangian_set_UpdateGhostObjects(this, block)

    Updates ghost objects Copies objects that lie near or cross the block's boundaries

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    Set of Lagrangian objects
    class(block_obj), intent(in), optional :: block

    Optional alternative block

procedure, public :: UpdateNeighborList => lagrangian_set_UpdateNeighborList

procedure, public :: UpdateNormals => marker_set_UpdateNormals

procedure, public :: UpdateSDF => marker_set_UpdateSDF

  • private subroutine marker_set_UpdateSDF(this, SA)

    Updates the Surface Density Function

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Immersed boundary
    type(eulerian_obj_r), intent(inout) :: SA

procedure, public :: Write => marker_set_Write

  • private subroutine marker_set_Write(this, iter, time)

    Write marker data to file in parallel

    Arguments

    Type IntentOptional Attributes Name
    class(marker_set), intent(inout) :: this

    Set of ib markers
    integer, intent(in) :: iter

    Iteration at write
    real(kind=wp), intent(in) :: time

    Time at write

procedure, public :: lagrangian_set_Final

  • private subroutine lagrangian_set_Final(this)

    Finalize the structure

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A set of Lagrangian objects

procedure, public :: lagrangian_set_Init

  • private subroutine lagrangian_set_Init(this, name, block, parallel)

    Initialize lagrangian objects related IO

    Arguments

    Type IntentOptional Attributes Name
    class(lagrangian_set), intent(inout) :: this

    A set of Lagrangian objects
    character(len=*), intent(in) :: name

    Name of variable
    type(block_obj), intent(in), target :: block

    A block object
    type(parallel_obj), intent(in), target :: parallel

    parallel structure from main program